CPTRA | Tool name | CPTRA |
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| URL | http://people.tamu.edu/~syuan/cptra/cptra.html |
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| Important features | 1. CPTRA is Cross Platform TRanscriptome Analysis.
2. It is used for analyzing transcriptome data.
3. It can be used for analysis of species where reference genome is unavailable.
4. It is also used for RNA seq quantitation. |
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| Citations | Zhou X, Su Z, Sammons RD, Peng Y, Tranel PJ, Stewart CN Jr, Yuan JS. Novel software package for cross-platform transcriptome analysis (CPTRA). BMC
Bioinformatics. 2009 Oct 8;10 Suppl 11:S16. PubMed PMID: 19811681. |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment, RNA seq analysis |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | FASTA, FASTQ |
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| Operating language | Python |
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| Platform | All platforms |
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